Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs71442401 chr2:2618377 C/T 4.06E-5 521 38.98 44.57 8.35 KM Plot
KIRC rs71481556 chr10:81926171 A/G 2.14E-6 521 38.83 50.07 3.93 KM Plot
KIRC rs71494914 chr10:582313 C/G 3.28E-9 511 39.23 38.83 3.67 KM Plot
KIRC rs71542374 chr6:50801490 GAC/G 4.45E-6 523 40 40.6 15.3 KM Plot
KIRC rs71544657 chr6:25914035 G/GT 2.33E-9 518 41.73 36.28 2.38 KM Plot
KIRC rs71557315 chr6:26041870 G/T 6.36E-9 522 41 36.95 3.37 KM Plot
KIRC rs71557316 chr6:26072981 G/A 4.19E-9 523 41.27 33.93 3.37 KM Plot
KIRC rs71674967 chr6:25875567 CTGTAT/C 2.8E-5 513 41.27 33.82 4.1 KM Plot
KIRC rs71971811 chr2:168090902 TTA/T 1.53E-8 518 40.6 32.42 3.37 KM Plot
KIRC rs72324954 chr6:25863018 TGAAAA/T 7.44E-6 525 41.27 32.62 4.1 KM Plot
KIRC rs72711548 chr4:186925571 A/G 2.83E-5 514 44.57 31.3 42.2 KM Plot
KIRC rs72751494 chr5:25335090 C/T 8.38E-8 509 39.62 38.35 3.37 KM Plot
KIRC rs72770196 chr16:15702034 T/C 1.15E-10 515 40.28 37.03 4.45 KM Plot
KIRC rs72770197 chr16:15702060 C/T 1.03E-10 516 40.28 37.25 4.45 KM Plot
KIRC rs72772835 chr2:134554 C/T 2.19E-6 522 37.95 46.17 3.63 KM Plot